Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSBSLP00000010475Si:dkey-19b23.12. (179 aa)    
Predicted Functional Partners:
LOC114857007
Uncharacterized LOC114857007.
   
 0.558
mysm1
Myb like, SWIRM and MPN domains 1.
    
  0.490
arid4b
AT-rich interaction domain 4B.
    
 0.467
arid4a
AT-rich interaction domain 4A.
    
 0.467
LOC114866502
Glutamate receptor ionotropic, NMDA 1.
    
  0.459
LOC114847215
Thioredoxin domain-containing protein 3 homolog.
    
 0.451
slf1
SMC5-SMC6 complex localization factor 1.
   
 0.444
wdr90
WD repeat domain 90.
    
 0.439
LOC114846828
ranBP2-like and GRIP domain-containing protein 3.
    
 0.429
mib2
Mindbomb E3 ubiquitin protein ligase 2.
   
  0.425
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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