Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
c1qtnf5C1q and TNF related 5. (250 aa)    
Predicted Functional Partners:
mfrp
Membrane frizzled-related protein.
   
 
 0.999
dhfr
Dihydrofolate reductase.
      
 0.615
fam98b
Family with sequence similarity 98 member B.
      
 0.549
psmc5
Proteasome 26S subunit, ATPase 5.
    
   0.542
LOC114867513
Beta-crystallin A1-1.
      
 0.523
noa1
Nitric oxide associated 1.
      
 0.511
LOC114867655
RILP-like protein 1.
      
 0.511
prpf8
pre-mRNA processing factor 8.
      
 0.502
LOC114841810
EGF-containing fibulin-like extracellular matrix protein 1.
    
 
 0.455
mthfd1
Methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1.
      
 0.450
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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