STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114844020HORMA domain-containing protein 1-like. (306 aa)    
Predicted Functional Partners:
knl1
Kinetochore scaffold 1.
   
 
 0.728
trip13
Thyroid hormone receptor interactor 13.
   
 
 0.642
rad51
RAD51 recombinase.
   
 
 0.630
mnd1
Meiotic nuclear divisions 1.
    
 
 0.576
smc3
Structural maintenance of chromosomes 3.
    
 
 0.543
LOC114869063
Serine/threonine-protein kinase DCLK1-like.
    
 
 0.543
fancm
FA complementation group M.
      
 0.543
LOC114868484
Serine/threonine-protein kinase DCLK1-like.
    
 
 0.543
tex11
Testis expressed 11.
   
 
 0.535
rad51b
RAD51 paralog B.
   
 
 0.528
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.