Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pctpPhosphatidylcholine transfer protein. (269 aa)    
Predicted Functional Partners:
stard5
StAR related lipid transfer domain containing 5.
   
  
 0.758
stard3
StAR related lipid transfer domain containing 3.
      
 0.733
LOC114865011
START domain-containing protein 10-like.
      
 0.725
gramd1c
GRAM domain containing 1C.
      
 0.656
acot13
acyl-CoA thioesterase 13.
    
 
 0.650
stxbp4
Syntaxin binding protein 4.
      
 0.649
star
Steroidogenic acute regulatory protein.
      
 0.615
acot9
acyl-CoA thioesterase 9.
      
 0.615
ENSBSLP00000051673
annotation not available
      
 0.614
ENSBSLP00000013791
annotation not available
      
 0.530
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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