Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
llphLLP homolog, long-term synaptic facilitation factor. (126 aa)    
Predicted Functional Partners:
mrto4
MRT4 homolog, ribosome maturation factor.
   
 
 0.895
znf593
Zinc finger protein 593.
   
 
 0.894
nifk
Nucleolar protein interacting with the FHA domain of MKI67.
   
   0.888
tma16
Translation machinery associated 16 homolog.
   
 
 0.885
nip7
Nucleolar pre-rRNA processing protein NIP7.
   
   0.864
brix1
Biogenesis of ribosomes BRX1.
   
   0.862
LOC114861637
Protein mono-ADP-ribosyltransferase PARP12-like.
    
   0.845
eif6
Eukaryotic translation initiation factor 6.
   
 
 0.843
ccdc86
Coiled-coil domain containing 86.
   
   0.838
ebna1bp2
EBNA1 binding protein 2.
   
   0.838
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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