Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
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[Homology]
Score
hivep2HIVEP zinc finger 2. (2457 aa)    
Predicted Functional Partners:
LOC114865037
F-box/WD repeat-containing protein 11.
    
  0.746
tfcp2
Transcription factor CP2.
    
 
 0.646
pou2f1
POU class 2 homeobox 1.
    
 0.602
gpr84
G protein-coupled receptor 84.
    
 
 0.596
arid4b
AT-rich interaction domain 4B.
    
 0.579
arid4a
AT-rich interaction domain 4A.
    
 0.579
mysm1
Myb like, SWIRM and MPN domains 1.
    
  0.569
LOC114857041
NEDD4-like E3 ubiquitin-protein ligase WWP2.
    
 0.567
wwp1
WW domain containing E3 ubiquitin protein ligase 1.
    
 0.567
irx3
Iroquois homeobox 3.
    
 
 0.550
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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