Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TBC1D13TBC1 domain family member 13. (330 aa)    
Predicted Functional Partners:
rab35
RAB35, member RAS oncogene family.
     
 0.767
LOC114861032
Ras-related protein Rab-35-like.
     
 0.767
tbc1d19
TBC1 domain family member 19.
      
 0.742
spout1
SPOUT domain containing methyltransferase 1.
      
 0.738
LOC114854560
TBC1 domain family member 7-like.
      
 0.721
pex6
Peroxisomal biogenesis factor 6.
      
 0.700
dolk
Dolichol kinase.
      
 0.655
evi5
Ecotropic viral integration site 5.
      
 0.647
LOC114846377
EVI5-like protein.
      
 0.647
ift27
Intraflagellar transport 27.
     
 0.634
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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