STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pef1penta-EF-hand domain containing 1. (277 aa)    
Predicted Functional Partners:
sec31a
SEC31 homolog A, COPII coat complex component.
    
 0.934
LOC114845958
Protein transport protein Sec31A-like.
    
 0.930
KLHL12
Kelch like family member 12.
    
 0.859
kbtbd8
Kelch repeat and BTB domain containing 8.
    
 0.852
cast
Calpastatin.
   
 0.851
klhl8
Kelch like family member 8.
    
 0.838
klhl20
Kelch like family member 20.
    
 0.838
klhl7
Kelch like family member 7.
    
  0.836
klhl24
Kelch like family member 24.
    
  0.836
klhl15
Kelch like family member 15.
    
  0.836
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.