STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pkd2l1Polycystin 2 like 1, transient receptor potential cation channel. (774 aa)    
Predicted Functional Partners:
ENSBSLP00000050217
annotation not available
 
  
 0.942
pkd1
Polycystin 1, transient receptor potential channel interacting.
    
0.940
LOC114852570
Polycystic kidney disease protein 1-like 2.
    
0.932
ENSBSLP00000050050
annotation not available
    
0.932
exoc5
Exocyst complex component 5.
     
 0.776
trrap
Transformation/transcription domain associated protein.
    
  0.681
ccdc25
Coiled-coil domain containing 25.
    
 0.679
exoc4
Exocyst complex component 4.
     
 0.650
exoc6
Exocyst complex component 6.
     
 0.644
LOC114865996
Exocyst complex component 6B-like.
     
 0.644
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.