STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114844161RNA-binding protein 4.1-like. (419 aa)    
Predicted Functional Partners:
LOC114866591
TNF receptor-associated factor 2-like.
    
  0.692
LOC114864209
Heterogeneous nuclear ribonucleoprotein A0-like.
  
 0.667
LOC114866707
Heterogeneous nuclear ribonucleoprotein K-like.
   
 0.658
hnrnpk
Heterogeneous nuclear ribonucleoprotein K.
   
 0.658
LOC114864211
Heterogeneous nuclear ribonucleoprotein A0-like.
  
0.606
LOC114869581
Heterogeneous nuclear ribonucleoprotein A/B-like.
  
  0.603
LOC114864021
Heterogeneous nuclear ribonucleoprotein A/B-like.
  
  0.602
LOC114867137
Heterogeneous nuclear ribonucleoprotein D0-like.
  
  0.600
LOC114858646
Heterogeneous nuclear ribonucleoprotein A1-like.
  
0.599
hnrnpa3
Heterogeneous nuclear ribonucleoprotein A3.
   
0.565
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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