STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114849870RNA-binding protein 25-like. (817 aa)    
Predicted Functional Partners:
snrpc
Small nuclear ribonucleoprotein polypeptide C.
   
 0.989
snrpa1
Small nuclear ribonucleoprotein polypeptide A.
   
 0.987
sf3b3
Splicing factor 3b subunit 3.
    
 0.981
sf3b1
Splicing factor 3b subunit 1.
   
 0.980
snrpd2
Small nuclear ribonucleoprotein D2 polypeptide.
    
 0.979
snrpd1
Small nuclear ribonucleoprotein D1 polypeptide.
    
 0.977
LOC114863288
Putative RNA-binding protein Luc7-like 1.
   
 0.975
luc7l
LUC7 like.
   
 0.975
ENSBSLP00000048522
Small nuclear ribonucleoprotein polypeptide G.
    
  0.974
snrnp70
Small nuclear ribonucleoprotein U1 subunit 70.
   
 0.971
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.