STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
scfd1Sec1 family domain containing 1. (632 aa)    
Predicted Functional Partners:
gosr2
Golgi SNAP receptor complex member 2.
    
 0.999
bet1
Bet1 golgi vesicular membrane trafficking protein.
   
 0.999
stx5
Syntaxin 5.
    
 0.998
ykt6
YKT6 v-SNARE homolog.
    
 0.997
LOC114844455
Vesicle-trafficking protein SEC22b-like.
   
 0.981
BET1L
Bet1 golgi vesicular membrane trafficking protein like.
   
 0.978
stx18
Syntaxin 18.
    
 
 0.971
NSF
N-ethylmaleimide sensitive factor, vesicle fusing ATPase.
   
 0.967
LOC114846498
Vesicle-fusing ATPase-like.
   
 0.967
sec22c
SEC22 homolog C, vesicle trafficking protein.
   
 0.966
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.