Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC114846374RNA binding protein fox-1 homolog 3-like. (417 aa)    
Predicted Functional Partners:
ncbp2
Nuclear cap binding protein subunit 2.
  
 
 0.676
srsf2
Serine and arginine rich splicing factor 2.
  
 
 0.659
elavl3
ELAV like RNA binding protein 3.
  
 0.605
ELAVL2
ELAV like RNA binding protein 2.
  
 0.601
tial1
TIA1 cytotoxic granule associated RNA binding protein like 1.
  
 
 0.598
eif4a3
Eukaryotic translation initiation factor 4A3.
   
 0.594
NCBP1
Nuclear cap binding protein subunit 1.
    
 0.594
LOC114848281
ELAV-like protein 1.
  
 0.590
LOC114853617
ELAV-like protein 1.
  
 0.588
LOC114855262
RNA-binding protein Musashi homolog 1-like.
  
 
 0.544
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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