STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rft1RFT1 homolog. (546 aa)    
Predicted Functional Partners:
psma5
Proteasome 20S subunit alpha 5.
    
  0.913
ENSBSLP00000028374
Proteasome 20S subunit beta 3.
    
  0.913
psma8
Proteasome 20S subunit alpha 8.
    
  0.913
psmb1
Proteasome 20S subunit beta 1.
    
  0.908
psma1
Proteasome 20S subunit alpha 1.
    
  0.897
psma3
Proteasome 20S subunit alpha 3.
    
  0.852
psmb2
Proteasome 20S subunit beta 2.
    
  0.834
LOC114844604
Proteasome subunit beta type-5-like.
    
  0.808
LOC114851918
Proteasome subunit alpha type-4-like.
    
  0.808
psmb8
Proteasome 20S subunit beta 8.
    
  0.808
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.