Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC114860037Lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog. (138 aa)    
Predicted Functional Partners:
litaf
Lipopolysaccharide induced TNF factor.
  
 
0.922
LOC114862329
Lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog.
  
  
 
0.905
bag3
BCL2 associated athanogene 3.
    
 
 0.811
nedd4
NEDD4 E3 ubiquitin protein ligase.
    
 
 0.793
nedd4l
NEDD4 like E3 ubiquitin protein ligase.
    
 
 0.793
stam2
Signal transducing adaptor molecule 2.
    
 0.712
LOC114863211
Interleukin-1 beta-like.
      
 0.645
fancm
FA complementation group M.
    
 0.641
il10
Interleukin 10.
      
 0.615
lin54
Lin-54 DREAM MuvB core complex component.
    
 0.588
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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