Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC114857644Cingulin-like protein 1. (1063 aa)    
Predicted Functional Partners:
cgnl1
Cingulin like 1.
  
  
 
0.911
LOC114865431
Rho guanine nucleotide exchange factor 2-like.
    
  0.900
LOC114857079
Tight junction protein ZO-1-like.
     
  0.900
ARHGEF2
Rho guanine nucleotide exchange factor 2-like.
    
  0.900
LOC114851841
Tight junction protein ZO-1-like.
     
  0.900
LOC114847215
Thioredoxin domain-containing protein 3 homolog.
   
 
 0.640
wdr90
WD repeat domain 90.
   
 0.588
mdh2
Malate dehydrogenase 2.
    
 0.544
traf7
TNF receptor associated factor 7.
    
  0.497
ckap5
Cytoskeleton associated protein 5.
    
 0.495
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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