Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC114854000Excitatory amino acid transporter 1-like. (585 aa)    
Predicted Functional Partners:
slc7a5
Solute carrier family 7 member 5.
  
 
 0.716
blmh
Bleomycin hydrolase.
      
 0.663
med19
Mediator complex subunit 19.
      
 0.655
slc38a9
Solute carrier family 38 member 9.
     
 0.648
slc16a10
Solute carrier family 16 member 10.
      
 0.614
slc3a1
Solute carrier family 3 member 1.
  
 
 0.531
slc6a14
Solute carrier family 6 member 14.
     
 0.520
dbt
Dihydrolipoamide branched chain transacylase E2.
    
 0.500
LOC114856106
Caveolin-3-like.
    
  0.472
LOC114845428
3-hydroxy-3-methylglutaryl-coenzyme A reductase-like.
     
 0.462
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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