Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dhrs12Dehydrogenase/reductase 12. (335 aa)    
Predicted Functional Partners:
palb2
Partner and localizer of BRCA2.
  
 0.613
ndufab1
NADH:ubiquinone oxidoreductase subunit AB1.
  
 0.613
tkfc
Triokinase and FMN cyclase.
   
 0.600
eci2
enoyl-CoA delta isomerase 2.
   
 0.585
fdx1
Ferredoxin 1.
  
 0.579
fdx2
Ferredoxin 2.
  
 0.579
aasdh
Aminoadipate-semialdehyde dehydrogenase.
  
 0.578
coq3
Coenzyme Q3, methyltransferase.
   
 0.578
isoc2
Isochorismatase domain containing 2.
   
 0.571
sord
Sorbitol dehydrogenase.
  
 
 0.564
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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