Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC114853984NACHT, LRR and PYD domains-containing protein 12-like. (1037 aa)    
Predicted Functional Partners:
LOC114865542
Thioredoxin-interacting protein-like.
    
 0.721
LOC114843224
Thioredoxin-interacting protein-like.
    
 0.721
ENSBSLP00000015271
BRCA1/BRCA2-containing complex, subunit 3.
    
  0.667
LOC114843270
Apoptosis-associated speck-like protein containing a CARD.
    
 0.659
LOC114848314
Flocculation protein FLO11-like.
    
 0.657
prkn
Parkin RBR E3 ubiquitin protein ligase.
    
 
 0.488
USP50
Ubiquitin specific peptidase 50.
    
   0.481
LOC114866589
Serine/threonine-protein kinase Nek6-like.
    
 
 0.453
nek7
NIMA related kinase 7.
    
 
 0.453
wdr90
WD repeat domain 90.
    
   0.421
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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