Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nup37Nucleoporin 37. (325 aa)    
Predicted Functional Partners:
nup160
Nucleoporin 160.
   
 0.999
nup85
Nucleoporin 85.
   
 0.999
nup133
Nucleoporin 133.
   
 0.999
nup43
Nucleoporin 43.
   
 0.999
nup98
Nucleoporin 98.
    
 0.998
nup107
Nucleoporin 107.
   
 0.998
ahctf1
AT-hook containing transcription factor 1.
    
 0.995
LOC114856205
Protein SEC13 homolog.
   
 0.995
LOC114855753
Protein SEC13 homolog.
   
 0.990
nup155
Nucleoporin 155.
   
 0.988
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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