Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tbcdTubulin folding cofactor D. (1257 aa)    
Predicted Functional Partners:
tbcc
Tubulin folding cofactor C.
    
 0.993
arl2
ADP ribosylation factor like GTPase 2.
    
 0.992
tbce
Tubulin folding cofactor E.
    
 0.984
tbcb
Tubulin folding cofactor B.
    
 0.972
tbca
Tubulin folding cofactor A.
    
 0.963
pfdn4
Prefoldin subunit 4.
    
 
 0.933
mad1l1
Mitotic arrest deficient 1 like 1.
   
 
 0.914
mad2l1
Mitotic arrest deficient 2 like 1.
    
 
 0.903
rp2
RP2 activator of ARL3 GTPase.
    
 0.898
kif17
Kinesin family member 17.
    
 
 0.888
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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