Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
elavl4ELAV like RNA binding protein 4. (399 aa)    
Predicted Functional Partners:
zcchc3
Zinc finger CCHC-type containing 3.
   
 
 0.751
rbm45
RNA binding motif protein 45.
    
   0.723
tra2b
Transformer 2 beta homolog.
  
 0.680
tra2a
Transformer 2 alpha homolog.
  
 0.670
LOC114849062
Transformer-2 protein homolog alpha-like.
  
 0.668
faf1
Fas associated factor 1.
    
 
 0.647
LOC114842767
RNA binding protein fox-1 homolog 1-like.
  
 
 0.636
LOC114846585
RNA binding protein fox-1 homolog 3-like.
  
 0.629
prkcd
Protein kinase C delta.
    
 0.619
LOC114846385
RNA binding protein fox-1 homolog 3-like.
  
 0.612
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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