STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arl16ADP ribosylation factor like GTPase 16. (172 aa)    
Predicted Functional Partners:
LOC114854174
Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta.
    
   0.636
PDE6D
Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta-like.
    
   0.636
ENSBSLP00000048337
annotation not available
    
  0.578
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
  0.564
ENSBSLP00000021971
annotation not available
    
 0.551
LOC114847215
Thioredoxin domain-containing protein 3 homolog.
    
 0.516
bard1
BRCA1 associated RING domain 1.
    
  0.516
mysm1
Myb like, SWIRM and MPN domains 1.
    
  0.505
srprb
SRP receptor subunit beta.
      
 0.504
gtf3c3
General transcription factor IIIC subunit 3.
    
 0.497
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.