Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC114865292Transcription factor SOX-4-like. (370 aa)    
Predicted Functional Partners:
sox5
SRY-box transcription factor 5.
   
 0.706
tcf7
Transcription factor 7.
    
 0.677
ctnnb1
Catenin beta 1.
    
 0.669
LOC114867101
POU domain, class 5, transcription factor 1-like.
    
 0.608
lef1
Lymphoid enhancer binding factor 1.
    
 0.605
sox13
SRY-box transcription factor 13.
    
 0.571
LOC114861532
Transcription factor 7-like 1-A.
    
 0.552
LOC114851283
Lymphoid enhancer-binding factor 1-like.
    
 0.552
LOC114866425
Transcription factor 7-like 1-B.
    
 0.552
tcf7l2
Transcription factor 7 like 2.
    
 0.552
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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