Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC114844885Krueppel-like factor 4. (439 aa)    
Predicted Functional Partners:
LOC114867101
POU domain, class 5, transcription factor 1-like.
    
 0.940
foxa3
Forkhead box A3.
    
 0.803
myc
MYC proto-oncogene, bHLH transcription factor.
    
 
 0.731
LOC114847959
Steroid hormone receptor ERR2.
    
 0.703
LOC114853667
Homeobox protein NANOG-like.
    
 
 0.691
LOC114853795
Transcription factor Sox-2-like.
    
 0.637
LOC114853794
Transcription factor Sox-2-like.
    
 0.637
LOC114863926
Transcription factor Sox-3.
    
 0.637
gata4
GATA binding protein 4.
    
 0.613
ctnnb1
Catenin beta 1.
    
 
 0.601
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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