Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RAB17RAB17, member RAS oncogene family. (227 aa)    
Predicted Functional Partners:
LOC114868516
Rab5 GDP/GTP exchange factor-like.
   
 0.932
LOC114869334
Rab5 GDP/GTP exchange factor-like.
   
 0.932
rbsn
Rabenosyn, RAB effector.
    
 0.931
LOC114862273
Rab5 GDP/GTP exchange factor-like.
   
 0.931
rabep1
Rabaptin, RAB GTPase binding effector protein 1.
   
 0.877
appl1
Adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1.
    
 
 0.866
APPL1
Adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1.
    
 
 0.866
appl2
Adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2.
    
 
 0.866
vps45
Vacuolar protein sorting 45 homolog.
    
 0.850
ankfy1
Ankyrin repeat and FYVE domain containing 1.
    
 0.825
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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