LOC114864040 protein (Betta splendens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC114864040

Paired box protein Pax-1-like. (136 aa)

Predicted Functional Partners:

LOC114848842

0.636

LOC114868335

0.632

gsc

0.632

LOC114869970

0.625

ENSBSLP00000016169

0.615

runx2

0.610

LOC114848183

0.610

ENSBSLP00000048009

0.605

lhx1

0.602

LOC114867177

0.600

Your Current Organism:

Betta splendens

NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSBSLP00000016169	LOC114864040	ENSBSLP00000016169	ENSBSLP00000012403	annotation not available	Paired box protein Pax-1-like.	0.615
ENSBSLP00000048009	LOC114864040	ENSBSLP00000048009	ENSBSLP00000012403	annotation not available	Paired box protein Pax-1-like.	0.605
LOC114848183	LOC114864040	ENSBSLP00000037671	ENSBSLP00000012403	Runt-related transcription factor 3-like.	Paired box protein Pax-1-like.	0.610
LOC114848842	LOC114864040	ENSBSLP00000000544	ENSBSLP00000012403	Runt-related transcription factor 1-like.	Paired box protein Pax-1-like.	0.636
LOC114864040	ENSBSLP00000016169	ENSBSLP00000012403	ENSBSLP00000016169	Paired box protein Pax-1-like.	annotation not available	0.615
LOC114864040	ENSBSLP00000048009	ENSBSLP00000012403	ENSBSLP00000048009	Paired box protein Pax-1-like.	annotation not available	0.605
LOC114864040	LOC114848183	ENSBSLP00000012403	ENSBSLP00000037671	Paired box protein Pax-1-like.	Runt-related transcription factor 3-like.	0.610
LOC114864040	LOC114848842	ENSBSLP00000012403	ENSBSLP00000000544	Paired box protein Pax-1-like.	Runt-related transcription factor 1-like.	0.636
LOC114864040	LOC114867177	ENSBSLP00000012403	ENSBSLP00000018609	Paired box protein Pax-1-like.	LIM/homeobox protein Lhx5.	0.600
LOC114864040	LOC114868335	ENSBSLP00000012403	ENSBSLP00000022442	Paired box protein Pax-1-like.	Homeobox protein goosecoid-2-like.	0.632
LOC114864040	LOC114869970	ENSBSLP00000012403	ENSBSLP00000041898	Paired box protein Pax-1-like.	LIM/homeobox protein Lhx1-like.	0.625
LOC114864040	gsc	ENSBSLP00000012403	ENSBSLP00000044481	Paired box protein Pax-1-like.	Goosecoid homeobox.	0.632
LOC114864040	lhx1	ENSBSLP00000012403	ENSBSLP00000010333	Paired box protein Pax-1-like.	LIM homeobox 1.	0.602
LOC114864040	runx2	ENSBSLP00000012403	ENSBSLP00000019460	Paired box protein Pax-1-like.	RUNX family transcription factor 2.	0.610
LOC114867177	LOC114864040	ENSBSLP00000018609	ENSBSLP00000012403	LIM/homeobox protein Lhx5.	Paired box protein Pax-1-like.	0.600
LOC114868335	LOC114864040	ENSBSLP00000022442	ENSBSLP00000012403	Homeobox protein goosecoid-2-like.	Paired box protein Pax-1-like.	0.632
LOC114869970	LOC114864040	ENSBSLP00000041898	ENSBSLP00000012403	LIM/homeobox protein Lhx1-like.	Paired box protein Pax-1-like.	0.625
gsc	LOC114864040	ENSBSLP00000044481	ENSBSLP00000012403	Goosecoid homeobox.	Paired box protein Pax-1-like.	0.632
lhx1	LOC114864040	ENSBSLP00000010333	ENSBSLP00000012403	LIM homeobox 1.	Paired box protein Pax-1-like.	0.602
runx2	LOC114864040	ENSBSLP00000019460	ENSBSLP00000012403	RUNX family transcription factor 2.	Paired box protein Pax-1-like.	0.610