Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
phactr3Phosphatase and actin regulator 3. (528 aa)    
Predicted Functional Partners:
homer2
Homer scaffold protein 2.
    
   0.718
homer3
Homer scaffold protein 3.
    
   0.564
LOC114847274
Uncharacterized LOC114847274.
      
 0.517
LOC114848347
Galectin-9-like.
      
 0.453
TMX3
Thioredoxin related transmembrane protein 3.
     
  0.433
LOC114844085
Protein disulfide-isomerase TMX3-like.
     
  0.433
tmod3
Tropomodulin 3.
   
   0.404
APP
Amyloid beta precursor protein.
     
  0.400
aplp1
Amyloid beta precursor like protein 1.
     
  0.400
LOC114846772
Amyloid-beta A4 protein-like.
     
  0.400
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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