tspear protein (Betta splendens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

tspear

Thrombospondin type laminin G domain and EAR repeats. (617 aa)

Predicted Functional Partners:

ENSBSLP00000045399

0.735

whrn

0.677

ENSBSLP00000032685

0.645

gpsm2

0.640

hsd17b4

0.613

KRTCAP3

0.529

pold1

0.511

espnl

0.508

espn

0.508

ENSBSLP00000025764

0.508

Your Current Organism:

Betta splendens

NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSBSLP00000025764	ENSBSLP00000045399	ENSBSLP00000025764	ENSBSLP00000045399	annotation not available	annotation not available	0.651
ENSBSLP00000025764	espn	ENSBSLP00000025764	ENSBSLP00000005828	annotation not available	Espin.	0.899
ENSBSLP00000025764	gpsm2	ENSBSLP00000025764	ENSBSLP00000038035	annotation not available	G protein signaling modulator 2.	0.415
ENSBSLP00000025764	tspear	ENSBSLP00000025764	ENSBSLP00000012413	annotation not available	Thrombospondin type laminin G domain and EAR repeats.	0.508
ENSBSLP00000025764	whrn	ENSBSLP00000025764	ENSBSLP00000054308	annotation not available	Whirlin.	0.826
ENSBSLP00000032685	ENSBSLP00000045399	ENSBSLP00000032685	ENSBSLP00000045399	Small muscle protein X-linked.	annotation not available	0.660
ENSBSLP00000032685	gpsm2	ENSBSLP00000032685	ENSBSLP00000038035	Small muscle protein X-linked.	G protein signaling modulator 2.	0.688
ENSBSLP00000032685	hsd17b4	ENSBSLP00000032685	ENSBSLP00000007906	Small muscle protein X-linked.	Hydroxysteroid 17-beta dehydrogenase 4.	0.653
ENSBSLP00000032685	tspear	ENSBSLP00000032685	ENSBSLP00000012413	Small muscle protein X-linked.	Thrombospondin type laminin G domain and EAR repeats.	0.645
ENSBSLP00000045399	ENSBSLP00000025764	ENSBSLP00000045399	ENSBSLP00000025764	annotation not available	annotation not available	0.651
ENSBSLP00000045399	ENSBSLP00000032685	ENSBSLP00000045399	ENSBSLP00000032685	annotation not available	Small muscle protein X-linked.	0.660
ENSBSLP00000045399	espn	ENSBSLP00000045399	ENSBSLP00000005828	annotation not available	Espin.	0.651
ENSBSLP00000045399	espnl	ENSBSLP00000045399	ENSBSLP00000003091	annotation not available	Espin like.	0.651
ENSBSLP00000045399	tspear	ENSBSLP00000045399	ENSBSLP00000012413	annotation not available	Thrombospondin type laminin G domain and EAR repeats.	0.735
ENSBSLP00000045399	whrn	ENSBSLP00000045399	ENSBSLP00000054308	annotation not available	Whirlin.	0.816
KRTCAP3	tspear	ENSBSLP00000014398	ENSBSLP00000012413	Keratinocyte associated protein 3.	Thrombospondin type laminin G domain and EAR repeats.	0.529
espn	ENSBSLP00000025764	ENSBSLP00000005828	ENSBSLP00000025764	Espin.	annotation not available	0.899
espn	ENSBSLP00000045399	ENSBSLP00000005828	ENSBSLP00000045399	Espin.	annotation not available	0.651
espn	gpsm2	ENSBSLP00000005828	ENSBSLP00000038035	Espin.	G protein signaling modulator 2.	0.415
espn	tspear	ENSBSLP00000005828	ENSBSLP00000012413	Espin.	Thrombospondin type laminin G domain and EAR repeats.	0.508