Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
prrg2Proline rich and Gla domain 2. (215 aa)    
Predicted Functional Partners:
ENSBSLP00000055225
Shisa family member 4.
      
 0.816
laptm4a
Lysosomal protein transmembrane 4 alpha.
      
 0.731
rcn3
Reticulocalbin 3.
      
 0.729
nosip
Nitric oxide synthase interacting protein.
      
 0.707
med25
Mediator complex subunit 25.
      
 0.688
lrrc20
Leucine rich repeat containing 20.
      
 0.676
LOC114859862
Protein shisa-9B-like.
      
 0.673
scaf1
SR-related CTD associated factor 1.
      
 0.664
immp1l
Inner mitochondrial membrane peptidase subunit 1.
      
 0.654
rhbdl2
Rhomboid like 2.
      
 0.624
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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