STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zc3h14Zinc finger CCCH-type containing 14. (680 aa)    
Predicted Functional Partners:
nxf1
Nuclear RNA export factor 1.
    
 
 0.957
ddx39a
DExD-box helicase 39A.
    
 
 0.940
ncbp2
Nuclear cap binding protein subunit 2.
    
 
 0.922
eif4a3
Eukaryotic translation initiation factor 4A3.
    
 
 0.918
NCBP1
Nuclear cap binding protein subunit 1.
   
 
 0.917
ncbp3
Nuclear cap binding subunit 3.
   
 
 0.914
rae1
Ribonucleic acid export 1.
    
 
 0.914
LOC114860619
THO complex subunit 4-like.
    
 
 0.904
LOC114851024
THO complex subunit 4-A-like.
    
 
 0.904
pnn
Pinin, desmosome associated protein.
    
 
 0.903
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.