STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114855254Transforming acidic coiled-coil-containing protein 1-like. (902 aa)    
Predicted Functional Partners:
LOC114870507
Transforming acidic coiled-coil-containing protein 2-like.
    
 
 0.964
ckap5
Cytoskeleton associated protein 5.
    
 0.963
nif3l1
NGG1 interacting factor 3 like 1.
    
   0.860
LOC114865037
F-box/WD repeat-containing protein 11.
    
   0.860
lsm7
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 
 0.834
ENSBSLP00000048522
Small nuclear ribonucleoprotein polypeptide G.
    
   0.782
memo1
Mediator of cell motility 1.
    
  0.780
LOC114864554
Aurora kinase B-like.
    
 0.770
aurka
Aurora kinase A.
    
 0.770
tacc3
Transforming acidic coiled-coil containing protein 3.
    
 
 0.767
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.