STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114845091Interferon regulatory factor 4-like. (465 aa)    
Predicted Functional Partners:
traf6
TNF receptor associated factor 6.
   
 0.769
suox
Sulfite oxidase.
     
 0.755
IRF1
Interferon regulatory factor 1-like.
  
0.704
sgk3
Serum/glucocorticoid regulated kinase family member 3.
    
 0.656
LOC114857950
Monocyte chemotactic protein 1B-like.
   
 
 0.636
myd88
MYD88 innate immune signal transduction adaptor.
   
 0.595
spi1
Spi-1 proto-oncogene.
   
 
 0.594
LOC114862140
Transmembrane emp24 domain-containing protein 7-like.
   
 0.582
LOC114845051
TIR domain-containing adapter molecule 1-like.
   
 0.582
LOC114851763
Histone-binding protein RBBP7.
   
 0.577
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.