Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSBSLP00000012701Forkhead box Q1a. (279 aa)    
Predicted Functional Partners:
prdm1
PR/SET domain 1.
    
 
 0.657
wnt9b
Wnt family member 9B.
      
 0.626
LOC114847637
3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase-like.
      
 0.614
cramp1
Cramped chromatin regulator homolog 1.
    
 
 0.536
gmds
GDP-mannose 4,6-dehydratase.
      
 0.508
wnt9a
Wnt family member 9A.
      
 0.464
LOC114847328
DNA-binding protein SATB2-like.
      
 0.460
LOC114849445
PR domain zinc finger protein 1-like.
    
 
 0.457
hoxc13
Homeobox C13.
    
 
 0.457
LOC114866058
PR domain zinc finger protein 1-like.
    
 
 0.457
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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