Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC114847794Oligodendrocyte transcription factor 2-like. (307 aa)    
Predicted Functional Partners:
LOC114848434
Homeobox protein Nkx-2.2a.
   
 0.906
sox10
SRY-box transcription factor 10.
   
 
 0.850
nkx6-1
NK6 homeobox 1.
   
  
 0.731
shh
Sonic hedgehog signaling molecule.
      
 0.689
elavl3
ELAV like RNA binding protein 3.
   
  
 0.665
mnx1
Motor neuron and pancreas homeobox 1.
   
 
 0.657
CNP
2',3'-cyclic nucleotide 3' phosphodiesterase.
      
 0.654
irx3
Iroquois homeobox 3.
    
 
 0.644
LOC114864136
Myelin proteolipid protein-like.
   
  
 0.635
sp7
Sp7 transcription factor.
    
 
 0.622
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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