Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ddx4DEAD-box helicase 4. (643 aa)    
Predicted Functional Partners:
dazl
Deleted in azoospermia like.
   
 0.917
piwil1
Piwi like RNA-mediated gene silencing 1.
   
 0.843
eftud2
Elongation factor Tu GTP binding domain containing 2.
  
 0.836
eif3b
Eukaryotic translation initiation factor 3 subunit B.
   
 
 0.833
prpf6
pre-mRNA processing factor 6.
   
 0.826
eif3g
Eukaryotic translation initiation factor 3 subunit G.
   
 
 0.821
cdc5l
Cell division cycle 5 like.
    
 0.797
dnd1
DND microRNA-mediated repression inhibitor 1.
    
 0.791
NCBP1
Nuclear cap binding protein subunit 1.
   
 0.788
eif3a
Eukaryotic translation initiation factor 3 subunit A.
   
 
 0.787
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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