Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SMAP1Stromal membrane-associated protein 1-like. (453 aa)    
Predicted Functional Partners:
sh3yl1
SH3 and SYLF domain containing 1.
    
 
 0.731
arfgap1
ADP ribosylation factor GTPase activating protein 1.
    
 
 0.622
synj1
Synaptojanin 1.
    
 
 0.621
sdha
Succinate dehydrogenase complex flavoprotein subunit A.
     
  0.601
LOC114869082
AP-1 complex subunit beta-1.
   
 
 0.554
ap1b1
Adaptor related protein complex 1 subunit beta 1.
    
 
 0.537
tbcd
Tubulin folding cofactor D.
      
 0.531
LOC114847686
Phosphatidylinositol-binding clathrin assembly protein-like.
   
   0.529
LOC114869526
Phosphatidylinositol-binding clathrin assembly protein-like.
   
   0.529
LOC114850073
Clathrin coat assembly protein AP180-like.
   
   0.529
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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