STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
brix1Biogenesis of ribosomes BRX1. (353 aa)    
Predicted Functional Partners:
wdr12
WD repeat domain 12.
   
 0.999
rsl24d1
Ribosomal L24 domain containing 1.
   
 0.999
pum3
Pumilio RNA binding family member 3.
   
 0.999
noc2l
NOC2 like nucleolar associated transcriptional repressor.
   
 0.999
ebna1bp2
EBNA1 binding protein 2.
   
 0.999
LOC114847461
Ribosomal RNA processing protein 1 homolog A-like.
   
 0.999
LOC114867891
WD repeat-containing protein 74-like.
   
 0.999
nifk
Nucleolar protein interacting with the FHA domain of MKI67.
   
 0.999
gtpbp4
GTP binding protein 4.
   
 0.999
nsa2
NSA2 ribosome biogenesis factor.
   
 0.999
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.