STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sec23aSec23 homolog A, coat complex II component. (778 aa)    
Predicted Functional Partners:
sec24c
SEC24 homolog C, COPII coat complex component.
   
 0.994
sec24d
SEC24 homolog D, COPII coat complex component.
   
0.994
sec24a
SEC24 homolog A, COPII coat complex component.
   
0.993
sec31a
SEC31 homolog A, COPII coat complex component.
   
 0.987
LOC114845958
Protein transport protein Sec31A-like.
   
 0.987
LOC114861680
Protein transport protein Sec24C-like.
   
 0.983
LOC114864668
Protein transport protein Sec24B-like.
   
 0.983
LOC114864653
Protein transport protein Sec24B-like.
   
0.983
LOC114856205
Protein SEC13 homolog.
   
 0.982
LOC114855753
Protein SEC13 homolog.
   
 0.982
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.