STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114847453Collagen alpha-2(VI) chain-like. (1040 aa)    
Predicted Functional Partners:
ENSBSLP00000050298
Collagen, type VI, alpha 1.
  
0.986
itga1
Integrin subunit alpha 1.
   
 
 0.840
itgb6
Integrin subunit beta 6.
    
 0.836
itgb4
Integrin subunit beta 4.
    
 0.836
itgb5
Integrin subunit beta 5.
    
 0.836
itgb8
Integrin subunit beta 8.
    
 0.835
itgb1
Integrin subunit beta 1.
    
 0.835
ITGA7
Integrin subunit alpha 7.
   
 0.831
itga2
Integrin subunit alpha 2.
   
 
 0.828
itga11
Integrin subunit alpha 11.
   
 
 0.828
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.