STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114844387tRNA selenocysteine 1-associated protein 1-like. (339 aa)    
Predicted Functional Partners:
snrpc
Small nuclear ribonucleoprotein polypeptide C.
   
 0.980
snrpa1
Small nuclear ribonucleoprotein polypeptide A.
   
 0.977
snrpe
Small nuclear ribonucleoprotein polypeptide E.
   
 0.974
snrpd1
Small nuclear ribonucleoprotein D1 polypeptide.
   
 0.973
snrpd2
Small nuclear ribonucleoprotein D2 polypeptide.
   
 0.972
ENSBSLP00000048522
Small nuclear ribonucleoprotein polypeptide G.
   
 0.972
sf3b1
Splicing factor 3b subunit 1.
   
 0.972
sf3b4
Splicing factor 3b subunit 4.
    
0.970
sf3a2
Splicing factor 3a subunit 2.
    
 0.970
sf3b3
Splicing factor 3b subunit 3.
    
 0.969
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.