STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114849615Protein SON-like. (961 aa)    
Predicted Functional Partners:
LOC114855633
RNA-binding protein 39-like.
   
  0.934
LOC114858301
RNA-binding protein 39-like.
   
  0.934
UNC79
Unc-79 homolog, NALCN channel complex subunit.
    
 0.869
setd2
SET domain containing 2, histone lysine methyltransferase.
   
 0.861
sf3b1
Splicing factor 3b subunit 1.
   
   0.844
prpf4b
pre-mRNA processing factor 4B.
   
   0.827
LOC114846828
ranBP2-like and GRIP domain-containing protein 3.
   
 0.818
LOC114849870
RNA-binding protein 25-like.
   
 
 0.813
LOC114848380
RNA-binding protein 25-like.
   
 
 0.813
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
  0.802
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.