STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdk1Pyruvate dehydrogenase kinase 1. (416 aa)    
Predicted Functional Partners:
dlat
Dihydrolipoamide S-acetyltransferase.
   
 0.936
map3k4
Mitogen-activated protein kinase kinase kinase 4.
   
 0.914
pdhx
Pyruvate dehydrogenase complex component X.
   
 0.909
pdhb
Pyruvate dehydrogenase E1 beta subunit.
    
 0.896
dld
Dihydrolipoamide dehydrogenase.
  
 0.857
LOC114866527
Tenascin-like.
     
 0.846
tnn
Tenascin N.
     
 0.846
tnr
Tenascin R.
     
 0.846
LOC114845776
Tenascin-like.
     
 0.846
hddc3
HD domain containing 3.
  
 
 0.794
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.