STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114861409Transcription factor IIIA-like. (357 aa)    
Predicted Functional Partners:
gtf3c1
General transcription factor IIIC subunit 1.
    
 0.854
bdp1
B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.
    
 0.845
gtf3c3
General transcription factor IIIC subunit 3.
    
 0.767
polr3c
RNA polymerase III subunit C.
    
 0.761
gtf3c5
General transcription factor IIIC subunit 5.
    
 0.756
polr2l
RNA polymerase II subunit L.
    
 0.731
brf1
BRF1 RNA polymerase III transcription initiation factor subunit.
   
 
 0.722
LOC114849404
Transcription factor IIIB 90 kDa subunit-like.
   
 
 0.722
LOC114847992
TATA box-binding protein-like protein 2.
   
 0.718
LOC114847991
TATA box-binding protein-like protein 2.
   
 0.718
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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