STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sarnpSAP domain containing ribonucleoprotein. (211 aa)    
Predicted Functional Partners:
ddx39a
DExD-box helicase 39A.
   
 0.998
thoc1
THO complex 1.
    
 0.987
chtop
Chromatin target of PRMT1.
   
 0.979
thoc7
THO complex 7.
   
 0.975
LOC114860619
THO complex subunit 4-like.
   
 0.971
thoc5
THO complex 5.
    
 0.971
thoc2
THO complex 2.
   
 0.968
thoc6
THO complex 6.
     
 0.961
thoc3
THO complex 3.
     
 0.961
ENSBSLP00000023908
Polymerase (DNA-directed), delta interacting protein 3.
   
 0.944
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.