STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bcdin3dBCDIN3 domain containing RNA methyltransferase. (254 aa)    
Predicted Functional Partners:
LOC114859819
Protein HEXIM-like.
    
 0.896
cdk9
Cyclin dependent kinase 9.
    
 
 0.759
sart3
Spliceosome associated factor 3, U4/U6 recycling protein.
    
 
 0.664
mettl16
Methyltransferase like 16.
    
 
 0.630
prpf3
pre-mRNA processing factor 3.
    
 
 0.619
prpf31
pre-mRNA processing factor 31.
    
 
 0.577
eif4b
Eukaryotic translation initiation factor 4B.
    
 0.563
zc3h10
Zinc finger CCCH-type containing 10.
   
  
 0.560
rnmt
RNA guanine-7 methyltransferase.
      
 0.543
eif4h
Eukaryotic translation initiation factor 4H.
    
 0.483
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.