STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ptch2Patched 2. (1478 aa)    
Predicted Functional Partners:
smo
Smoothened, frizzled class receptor.
    
 0.988
shh
Sonic hedgehog signaling molecule.
   
 0.977
dhh
Desert hedgehog signaling molecule.
   
 0.976
ENSBSLP00000007467
Indian hedgehog signaling molecule b.
   
 0.960
LOC114847652
Indian hedgehog B protein-like.
   
 0.960
boc
BOC cell adhesion associated, oncogene regulated.
    
 0.908
LOC114868355
Cell adhesion molecule-related/down-regulated by oncogenes-like.
    
 0.908
LOC114867283
Growth arrest-specific protein 1-like.
     
 0.901
gas1
Growth arrest specific 1.
     
 0.878
LOC114852445
Growth arrest-specific protein 1-like.
     
 0.878
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.