STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSBSLP00000016343PDZ and LIM domain 7. (271 aa)    
Predicted Functional Partners:
LOC114846412
LIM domain-binding protein 3-like.
 
   
  0.904
pdlim3
PDZ and LIM domain 3.
 
   
 0.770
myo3a
Myosin IIIA.
    
  0.764
LOC114867082
ARF GTPase-activating protein GIT2-like.
    
 0.738
git1
GIT ArfGAP 1.
    
 0.738
git2
GIT ArfGAP 2.
    
 0.738
tlnrd1
Talin rod domain containing 1.
   
 0.723
LOC114851144
Protein-tyrosine kinase 2-beta-like.
    
 0.705
ptk2b
Protein tyrosine kinase 2 beta.
    
 0.705
LOC114865544
Focal adhesion kinase 1-like.
    
 0.705
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.