STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DHX15-2pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15. (766 aa)    
Predicted Functional Partners:
utp3
UTP3 small subunit processome component.
   
 0.988
nop58
NOP58 ribonucleoprotein.
   
 0.986
bysl
Bystin like.
   
 0.983
nop56
NOP56 ribonucleoprotein.
   
 0.980
tfip11
Tuftelin interacting protein 11.
   
 0.980
eftud2
Elongation factor Tu GTP binding domain containing 2.
  
 0.980
snrpa1
Small nuclear ribonucleoprotein polypeptide A.
   
 0.978
wdr36
WD repeat domain 36.
   
 0.978
nat10
N-acetyltransferase 10.
  
 0.977
xab2
XPA binding protein 2.
   
 0.976
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.