STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
stag1Stromal antigen 1. (1260 aa)    
Predicted Functional Partners:
smc3
Structural maintenance of chromosomes 3.
   
 0.981
LOC114857749
Structural maintenance of chromosomes protein 1B-like.
   
 0.965
smc1a
Structural maintenance of chromosomes 1A.
   
 0.965
pds5a
PDS5 cohesin associated factor A.
   
 0.926
pds5b
PDS5 cohesin associated factor B.
   
 0.926
rec8
REC8 meiotic recombination protein.
   
 0.922
nipbl
NIPBL cohesin loading factor.
   
 0.913
rbm20
RNA binding motif protein 20.
   
 0.913
LOC114867157
nipped-B-like protein.
   
 0.913
LOC114865960
Double-strand-break repair protein rad21 homolog A-like.
   
 0.900
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.